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This online BAM is now available to the public. Some changes have been made to methods since the previous version. The members of the BAM Council are listed below. In addition recent changes for most Chapters are documented in a brief Revision History at the beginning of the Method. There is also e-mail contact information for each Chapter. Chapter numbers have been retained from the previous version. However, for this Table of Contents, chapters have been grouped by category. Please send comments to Karen Jinneman.
One of the changes in the update from Torrent Suite Software 2. The new file is sometimes referred to as unmapped BAM to indicate that it can still be produced in the absence of any reference genome. The mapping fields of the BAM are set to the usual defaults for unmapped reads. In the case of a reference genome being available, the mapping information is added to the BAM. In TS 3. In Torrent Suite Software 3. In Torrent Suite Software3. There are some small differences in some of the auxiliary information available relating to 5-clipping and 3-clipping. The flow signals formerly stored in the read data section of the SFF and the FZ tag of the unmapped BAM files are replaced by raw normalized signal values, which include phasing effects. In non-barcoded runs, or in composite SFFs in barcoded runs, key sequence is specified in global header.